No. words: 1181; after pruning: 1155


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:531)  509  0.00 0.19 0.19  UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1        1   532 (59)  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   (58)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   590 
   81    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1    22 
   85  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   506 
   93    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1    34 
  109  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   482 
  117    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1    58 
  125  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   466 
  129    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1    70 
  145  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   446 
  153    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1    94 
  277  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   314 
  285    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1   226 
  389  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   202 
  401    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1   342 
  405  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   186 
  441    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1   382 
  477  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1   114 
  481    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1   422 
  525  C UCW060_G02_BE406609Ta15P033A03P013F011F1_004.ab1    66 
  545    UCW059_G02_BE406609Ta15P033A03P013F011R1_004.ab1   486 
Contig length: old 649, new 650

Contig length: old 650, new 650
New start: 0