No. words: 1036; after pruning: 1010


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.3 (1,1:465)  444  0.00 0.22 0.22  UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1        5   466 (50)  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   (58)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   520 
   77    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1    22 
  137  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   384 
  141    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1    86 
  145  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   376 
  149    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1    94 
  157  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   364 
  177    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1   122 
  201  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   320 
  209    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1   154 
  289  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   232 
  301    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1   246 
  313  C UCW060_H02_BE406609Ta16P033A03P013F011F1_002.ab1   208 
  321    UCW059_H02_BE406609Ta16P033A03P013F011R1_002.ab1   266 
Contig length: old 570, new 571

Contig length: old 571, new 571
New start: 0