No. words: 1018; after pruning: 992


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:531)  420  0.46 0.00 0.00  UCW059_A03_BE406609Ta17P033A03P013F011R1_031.ab1       97   532 (50)  C UCW060_A03_BE406609Ta17P033A03P013F011F1_031.ab1   (0)   436     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1    UCW059_A03_BE406609Ta17P033A03P013F011R1_031.ab1     1 
  292  C UCW060_A03_BE406609Ta17P033A03P013F011F1_031.ab1   241 
  308    UCW059_A03_BE406609Ta17P033A03P013F011R1_031.ab1   308 
  312  C UCW060_A03_BE406609Ta17P033A03P013F011F1_031.ab1   221 
  320    UCW059_A03_BE406609Ta17P033A03P013F011R1_031.ab1   320 
  324  C UCW060_A03_BE406609Ta17P033A03P013F011F1_031.ab1   209 
  332    UCW059_A03_BE406609Ta17P033A03P013F011R1_031.ab1   332 
  340  C UCW060_A03_BE406609Ta17P033A03P013F011F1_031.ab1   193 
  352    UCW059_A03_BE406609Ta17P033A03P013F011R1_031.ab1   352 
Contig length: old 582, new 582

Contig length: old 582, new 582
New start: 0