No. words: 1026; after pruning: 1000


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:529)  431  0.00 0.00 0.22  UCW059_C03_BE406609Ta19P033A03P013F011R1_027.ab1       86   531 (50)  C UCW060_C03_BE406609Ta19P033A03P013F011F1_027.ab1   (0)   445     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    UCW059_C03_BE406609Ta19P033A03P013F011R1_027.ab1     1 
  297  C UCW060_C03_BE406609Ta19P033A03P013F011F1_027.ab1   234 
  305    UCW059_C03_BE406609Ta19P033A03P013F011R1_027.ab1   305 
  317  C UCW060_C03_BE406609Ta19P033A03P013F011F1_027.ab1   214 
  321    UCW059_C03_BE406609Ta19P033A03P013F011R1_027.ab1   321 
  325  C UCW060_C03_BE406609Ta19P033A03P013F011F1_027.ab1   206 
  329    UCW059_C03_BE406609Ta19P033A03P013F011R1_027.ab1   329 
  337  C UCW060_C03_BE406609Ta19P033A03P013F011F1_027.ab1   194 
  353    UCW059_C03_BE406609Ta19P033A03P013F011R1_027.ab1   353 
Contig length: old 581, new 581

Contig length: old 581, new 581
New start: 0