No. words: 1030; after pruning: 1004


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.6 (1,1:460)  438  0.00 0.22 0.43  UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1        2   462 (49)  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   (59)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   519 
   78    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1    19 
   86  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   434 
   90    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1    31 
  146  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   374 
  150    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1    91 
  158  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   362 
  162    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   103 
  170  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   350 
  174    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   115 
  206  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   314 
  214    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   155 
  290  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   230 
  302    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   243 
  314  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   206 
  322    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   263 
  362  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   158 
  366    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   307 
  370  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   150 
  374    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   315 
  382  C UCW060_G03_BE406609Ta23P033A03P013F011F1_019.ab1   138 
  390    UCW059_G03_BE406609Ta23P033A03P013F011R1_019.ab1   331 
Contig length: old 569, new 570

Contig length: old 570, new 570
New start: 0