No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.5 (1,1:526)  500  0.00 0.38 0.00  UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1        5   526 (56)  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1   (47)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1   571 
   80    UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1    35 
   84  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1   488 
  108    UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1    63 
  112  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1   460 
  140    UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1    95 
  144  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1   428 
  380    UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1   335 
  384  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1   188 
  460    UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1   415 
  512  C UCW060_C01_BE406609Td03P033A03P013F011F1_011.ab1    60 
  532    UCW059_C01_BE406609Td03P033A03P013F011R1_011.ab1   487 
Contig length: old 626, new 627

Contig length: old 627, new 627
New start: 0