No. words: 1168; after pruning: 1142


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:529)  507  0.00 0.38 0.00  UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1        1   529 (50)  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   (58)   531     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   589 
  102    UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1    42 
  106  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   484 
  118    UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1    58 
  130  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   460 
  142    UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1    82 
  146  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   444 
  150    UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1    90 
  154  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   436 
  390    UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1   330 
  394  C UCW060_D01_BE406609Td04P033A03P013F011F1_009.ab1   196 
  466    UCW059_D01_BE406609Td04P033A03P013F011R1_009.ab1   406 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0