No. words: 1033; after pruning: 1007


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.0 (1,1:465)  426  1.30 0.22 0.22  UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1        5   466 (49)  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   (56)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   518 
   75    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1    22 
   83  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   436 
   87    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1    34 
  155  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   364 
  163    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   110 
  171  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   348 
  175    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   122 
  223  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   296 
  227    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   174 
  271  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   248 
  275    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   222 
  287  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   232 
  295    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   242 
  303  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   216 
  307    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   254 
  311  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   208 
  319    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   266 
  331  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   188 
  339    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   286 
  359  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   160 
  363    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   310 
  367  C UCW060_E01_BE406609Td05P033A03P013F011F1_007.ab1   152 
  371    UCW059_E01_BE406609Td05P033A03P013F011R1_007.ab1   318 
Contig length: old 567, new 568

Contig length: old 568, new 568
New start: 0