No. words: 1035; after pruning: 1009


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.1 (1,1:464)  439  0.00 0.43 0.22  UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1        5   465 (50)  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   (58)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   520 
   91    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1    35 
  111  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   410 
  115    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1    59 
  123  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   398 
  127    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1    71 
  131  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   390 
  323    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1   267 
  327  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   194 
  371    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1   315 
  379  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1   142 
  399    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1   343 
  431  C UCW060_G01_BE406609Td07P033A03P013F011F1_003.ab1    90 
  447    UCW059_G01_BE406609Td07P033A03P013F011R1_003.ab1   391 
Contig length: old 570, new 571

Contig length: old 571, new 571
New start: 0