No. words: 1141; after pruning: 1115


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.2 (1,1:514)  495  0.20 0.00 0.00  UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1        5   515 (57)  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   (58)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   569 
   62    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1     8 
  345  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   225 
  353    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1   299 
  361  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   209 
  365    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1   311 
  369  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   201 
  373    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1   319 
  385  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   185 
  397    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1   343 
  421  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   149 
  429    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1   375 
  437  C UCW060_H01_BE406609Td08P033A03P013F011F1_001.ab1   133 
  441    UCW059_H01_BE406609Td08P033A03P013F011R1_001.ab1   387 
Contig length: old 626, new 626

Contig length: old 626, new 626
New start: 0