No. words: 1044; after pruning: 1018


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.1 (1,1:460)  448  0.00 0.00 0.00  UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1        5   461 (62)  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   (64)   457     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   521 
   80    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1    20 
   84  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   438 
   92    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1    32 
  140  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   382 
  148    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1    88 
  156  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   366 
  168    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1   108 
  196  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   326 
  208    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1   148 
  272  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   250 
  344    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1   284 
  356  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   166 
  372    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1   312 
  380  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1   142 
  408    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1   348 
  456  C UCW060_A02_BE406609Td09P033A03P013F011F1_016.ab1    66 
  480    UCW059_A02_BE406609Td09P033A03P013F011R1_016.ab1   420 
Contig length: old 583, new 583

Contig length: old 583, new 583
New start: 0