No. words: 1620; after pruning: 1594


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:783)  752  0.00 0.13 0.25  UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1        1   785 (24)  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1   (27)   784     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1   811 
   49    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1    21 
  125  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1   687 
  129    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   101 
  641  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1   171 
  649    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   621 
  653  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1   159 
  709    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   681 
  717  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1    95 
  741    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   713 
  745  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1    67 
  753    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   725 
  761  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1    51 
  769    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   741 
  773  C UCW007R_A03_BE426080Ld01P002B06B121R1_031.ab1    39 
  777    UCW007F_A03_BE426080Ld01P002B06B121F1_031.ab1   749 
Contig length: old 836, new 837

Contig length: old 837, new 837
New start: 0