No. words: 1601; after pruning: 1575


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:766)  745  0.00 0.13 0.00  UCW007F_C03_BE426080Ld03P002B06B121F1_027.ab1        1   767 (43)  C UCW007R_C03_BE426080Ld03P002B06B121R1_027.ab1   (23)   768     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C UCW007R_C03_BE426080Ld03P002B06B121R1_027.ab1   791 
   39    UCW007F_C03_BE426080Ld03P002B06B121F1_027.ab1    15 
  607  C UCW007R_C03_BE426080Ld03P002B06B121R1_027.ab1   185 
  651    UCW007F_C03_BE426080Ld03P002B06B121F1_027.ab1   627 
  655  C UCW007R_C03_BE426080Ld03P002B06B121R1_027.ab1   137 
  691    UCW007F_C03_BE426080Ld03P002B06B121F1_027.ab1   667 
  695  C UCW007R_C03_BE426080Ld03P002B06B121R1_027.ab1    97 
  739    UCW007F_C03_BE426080Ld03P002B06B121F1_027.ab1   715 
  743  C UCW007R_C03_BE426080Ld03P002B06B121R1_027.ab1    49 
  783    UCW007F_C03_BE426080Ld03P002B06B121F1_027.ab1   759 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0