No. words: 1422; after pruning: 1368


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:672)  646  0.15 0.00 0.30  UCW007F_D03_BE426080Ld04P002B06B121F1_025.ab1        1   674 (32)  C UCW007R_D03_BE426080Ld04P002B06B121R1_025.ab1   (44)   672     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C UCW007R_D03_BE426080Ld04P002B06B121R1_025.ab1   716 
   48    UCW007F_D03_BE426080Ld04P002B06B121F1_025.ab1     4 
  539  C UCW007R_D03_BE426080Ld04P002B06B121R1_025.ab1   178 
  691    UCW007F_D03_BE426080Ld04P002B06B121F1_025.ab1   647 
Contig length: old 749, new 750

Contig length: old 750, new 749
New start: 0 
D Change at: 695; seg lengths: entry 0, contig 1