No. words: 1625; after pruning: 1599


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:779)  744  0.00 0.26 0.26  UCW007F_E03_BE426080Ld05P002B06B121F1_023.ab1        1   781 (31)  C UCW007R_E03_BE426080Ld05P002B06B121R1_023.ab1   (32)   781     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C UCW007R_E03_BE426080Ld05P002B06B121R1_023.ab1   813 
   53    UCW007F_E03_BE426080Ld05P002B06B121F1_023.ab1    19 
  661  C UCW007R_E03_BE426080Ld05P002B06B121R1_023.ab1   153 
  693    UCW007F_E03_BE426080Ld05P002B06B121F1_023.ab1   659 
  713  C UCW007R_E03_BE426080Ld05P002B06B121R1_023.ab1   101 
  789    UCW007F_E03_BE426080Ld05P002B06B121F1_023.ab1   755 
Contig length: old 845, new 846

Contig length: old 846, new 846
New start: 0