No. words: 1608; after pruning: 1582


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.4 (1,1:767)  744  0.00 0.13 0.00  UCW007F_B04_BE426080Ld10P002B06B121F1_030.ab1        1   767 (44)  C UCW007R_B04_BE426080Ld10P002B06B121R1_030.ab1   (28)   769     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C UCW007R_B04_BE426080Ld10P002B06B121R1_030.ab1   797 
   40    UCW007F_B04_BE426080Ld10P002B06B121F1_030.ab1    11 
  600  C UCW007R_B04_BE426080Ld10P002B06B121R1_030.ab1   198 
  692    UCW007F_B04_BE426080Ld10P002B06B121F1_030.ab1   663 
  696  C UCW007R_B04_BE426080Ld10P002B06B121R1_030.ab1   102 
  784    UCW007F_B04_BE426080Ld10P002B06B121F1_030.ab1   755 
Contig length: old 840, new 840

Contig length: old 840, new 840
New start: 0