No. words: 1189; after pruning: 1163


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:547)  523  0.00 0.00 0.55  UCW059_H06_BE426080Sn24P033C03P002B061R1_034.ab1        1   550 (39)  C UCW060_H06_BE426080Sn24P033C03P002B061F1_034.ab1   (53)   547     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C UCW060_H06_BE426080Sn24P033C03P002B061F1_034.ab1   600 
  461    UCW059_H06_BE426080Sn24P033C03P002B061R1_034.ab1   408 
  485  C UCW060_H06_BE426080Sn24P033C03P002B061F1_034.ab1   116 
  489    UCW059_H06_BE426080Sn24P033C03P002B061R1_034.ab1   436 
  497  C UCW060_H06_BE426080Sn24P033C03P002B061F1_034.ab1   104 
  509    UCW059_H06_BE426080Sn24P033C03P002B061R1_034.ab1   456 
Contig length: old 641, new 642

Contig length: old 642, new 642
New start: 0