No. words: 1130; after pruning: 1104


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:663)  409  0.47 0.00 0.23  UCW059_H09_BE426080Sn24P033D03P002B061R1_065.ab1      237   665 (37)  C UCW060_H09_BE426080Sn24P033D03P002B061F1_065.ab1   (0)   428     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1    UCW059_H09_BE426080Sn24P033D03P002B061R1_065.ab1     1 
  374  C UCW060_H09_BE426080Sn24P033D03P002B061F1_065.ab1   291 
  378    UCW059_H09_BE426080Sn24P033D03P002B061R1_065.ab1   378 
  442  C UCW060_H09_BE426080Sn24P033D03P002B061F1_065.ab1   223 
  518    UCW059_H09_BE426080Sn24P033D03P002B061R1_065.ab1   518 
  526  C UCW060_H09_BE426080Sn24P033D03P002B061F1_065.ab1   139 
  550    UCW059_H09_BE426080Sn24P033D03P002B061R1_065.ab1   550 
  582  C UCW060_H09_BE426080Sn24P033D03P002B061F1_065.ab1    83 
  590    UCW059_H09_BE426080Sn24P033D03P002B061R1_065.ab1   590 
Contig length: old 702, new 702

Contig length: old 702, new 702
New start: 0