No. words: 1378; after pruning: 1352


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:635)  613  0.00 0.00 0.31  UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1        1   637 (36)  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   (70)   635     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   705 
   78    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1     8 
  310  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   396 
  322    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   252 
  362  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   344 
  438    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   368 
  482  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   224 
  498    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   428 
  506  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   200 
  526    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   456 
  534  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   172 
  578    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   508 
  602  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1   104 
  606    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   536 
  626  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1    80 
  638    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   568 
  642  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1    64 
  650    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   580 
  658  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1    48 
  666    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   596 
  670  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1    36 
  674    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   604 
  678  C UCW060_E08_BE426080Ta13P033D03P002B061F1_056.ab1    28 
  682    UCW059_E08_BE426080Ta13P033D03P002B061R1_056.ab1   612 
Contig length: old 742, new 743

Contig length: old 743, new 743
New start: 0