No. words: 1401; after pruning: 1375


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:655)  636  0.00 0.00 0.15  UCW059_C09_BE426080Ta19P033D03P002B061R1_075.ab1        1   656 (38)  C UCW060_C09_BE426080Ta19P033D03P002B061F1_075.ab1   (52)   655     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C UCW060_C09_BE426080Ta19P033D03P002B061F1_075.ab1   707 
  608    UCW059_C09_BE426080Ta19P033D03P002B061R1_075.ab1   556 
  644  C UCW060_C09_BE426080Ta19P033D03P002B061F1_075.ab1    64 
  652    UCW059_C09_BE426080Ta19P033D03P002B061R1_075.ab1   600 
  660  C UCW060_C09_BE426080Ta19P033D03P002B061F1_075.ab1    48 
  676    UCW059_C09_BE426080Ta19P033D03P002B061R1_075.ab1   624 
  680  C UCW060_C09_BE426080Ta19P033D03P002B061F1_075.ab1    28 
  688    UCW059_C09_BE426080Ta19P033D03P002B061R1_075.ab1   636 
Contig length: old 745, new 746

Contig length: old 746, new 746
New start: 0