No. words: 1159; after pruning: 1133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:506)  493  0.00 0.20 0.00  UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1        1   507 (89)  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   (55)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   563 
  106    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1    50 
  126  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   438 
  130    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1    74 
  138  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   426 
  178    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   122 
  182  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   382 
  194    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   138 
  198  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   366 
  202    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   146 
  206  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   358 
  230    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   174 
  270  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   294 
  274    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   218 
  282  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   282 
  294    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   238 
  346  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   218 
  378    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   322 
  410  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   154 
  418    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   362 
  454  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1   110 
  462    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   406 
  506  C UCW060_G06_BE426080Ta23P033C03P002B061F1_036.ab1    58 
  510    UCW059_G06_BE426080Ta23P033C03P002B061R1_036.ab1   454 
Contig length: old 652, new 652

Contig length: old 652, new 652
New start: 0