No. words: 1404; after pruning: 1378


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 10.9 (1,1:661)  632  0.00 0.15 0.15  UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1        6   662 (36)  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   (49)   657     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   706 
   80    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1    35 
   84  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   623 
  124    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1    79 
  128  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   579 
  160    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   115 
  164  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   543 
  212    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   167 
  220  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   487 
  260    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   215 
  300  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   407 
  436    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   391 
  448  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   259 
  460    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   415 
  468  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   239 
  476    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   431 
  484  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   223 
  500    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   455 
  516  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1   191 
  568    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   523 
  644  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1    63 
  652    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   607 
  656  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1    51 
  676    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   631 
  680  C UCW060_G09_BE426080Ta23P033D03P002B061F1_067.ab1    27 
  688    UCW059_G09_BE426080Ta23P033D03P002B061R1_067.ab1   643 
Contig length: old 742, new 743

Contig length: old 743, new 743
New start: 0