No. words: 1400; after pruning: 1374


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 12.4 (1,1:654)  632  0.00 0.00 0.00  UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1        8   655 (48)  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   (49)   648     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   697 
   93    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1    51 
   97  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   601 
  101    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1    59 
  109  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   589 
  117    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1    75 
  133  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   565 
  213    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   171 
  221  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   477 
  301    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   259 
  313  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   385 
  357    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   315 
  361  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   337 
  421    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   379 
  569  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1   129 
  581    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   539 
  625  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1    73 
  633    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   591 
  641  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1    57 
  653    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   611 
  661  C UCW060_C07_BE426080Td03P033D03P002B061F1_059.ab1    37 
  685    UCW059_C07_BE426080Td03P033D03P002B061R1_059.ab1   643 
Contig length: old 745, new 745

Contig length: old 745, new 745
New start: 0