No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.2 (1,1:536)  510  0.19 0.38 0.00  UCW059_E04_BE426080Td05P033C03P002B061R1_024.ab1        5   536 (50)  C UCW060_E04_BE426080Td05P033C03P002B061F1_024.ab1   (11)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCW060_E04_BE426080Td05P033C03P002B061F1_024.ab1   545 
   22    UCW059_E04_BE426080Td05P033C03P002B061R1_024.ab1    14 
Contig length: old 594, new 594

Contig length: old 594, new 594
New start: 0