No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:648)  426  1.11 0.00 0.00  UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1      198   649 (52)  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   (0)   452     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1     1 
  318  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   332 
  322    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   322 
  334  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   316 
  342    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   342 
  438  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   212 
  450    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   450 
  466  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   184 
  470    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   470 
  474  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   176 
  490    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   490 
  494  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   156 
  518    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   518 
  522  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1   128 
  542    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   542 
  574  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1    76 
  582    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   582 
  590  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1    60 
  606    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   606 
  618  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1    32 
  622    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   622 
  630  C UCW060_E07_BE426080Td05P033D03P002B061F1_055.ab1    20 
  646    UCW059_E07_BE426080Td05P033D03P002B061R1_055.ab1   646 
Contig length: old 701, new 701

Contig length: old 701, new 701
New start: 0