No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:527)  509  0.00 0.38 0.00  UCW059_G04_BE426080Td07P033C03P002B061R1_020.ab1        1   527 (58)  C UCW060_G04_BE426080Td07P033C03P002B061F1_020.ab1   (58)   529     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C UCW060_G04_BE426080Td07P033C03P002B061F1_020.ab1   587 
  113    UCW059_G04_BE426080Td07P033C03P002B061R1_020.ab1    53 
  213  C UCW060_G04_BE426080Td07P033C03P002B061F1_020.ab1   375 
  273    UCW059_G04_BE426080Td07P033C03P002B061R1_020.ab1   213 
  349  C UCW060_G04_BE426080Td07P033C03P002B061F1_020.ab1   239 
  353    UCW059_G04_BE426080Td07P033C03P002B061R1_020.ab1   293 
  381  C UCW060_G04_BE426080Td07P033C03P002B061F1_020.ab1   207 
  405    UCW059_G04_BE426080Td07P033C03P002B061R1_020.ab1   345 
Contig length: old 644, new 645

Contig length: old 645, new 645
New start: 0