No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:527)  513  0.00 0.19 0.00  UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1        1   528 (47)  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   (58)   529     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   587 
   78    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1    19 
   86  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   502 
   94    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1    35 
  102  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   486 
  106    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1    47 
  134  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   454 
  138    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1    79 
  158  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   430 
  162    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1   103 
  202  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   386 
  206    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1   147 
  210  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   378 
  214    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1   155 
  274  C UCW060_H04_BE426080Td08P033C03P002B061F1_018.ab1   314 
  290    UCW059_H04_BE426080Td08P033C03P002B061R1_018.ab1   231 
Contig length: old 634, new 634

Contig length: old 634, new 634
New start: 0