No. words: 1406; after pruning: 1380


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 11.9 (1,1:660)  628  0.15 0.15 0.00  UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1        4   654 (49)  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   (44)   659     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   703 
   48    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1     7 
   57  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   646 
   61    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1    20 
   69  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   634 
   73    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1    32 
   85  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   618 
   89    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1    48 
  169  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   534 
  173    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   132 
  181  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   522 
  193    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   152 
  309  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   394 
  321    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   280 
  333  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   370 
  341    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   300 
  345  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   358 
  425    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   384 
  465  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   238 
  473    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   432 
  485  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1   218 
  589    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   548 
  641  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1    62 
  649    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   608 
  667  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1    36 
  675    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   634 
  679  C UCW060_H07_BE426080Td08P033D03P002B061F1_049.ab1    24 
  683    UCW059_H07_BE426080Td08P033D03P002B061R1_049.ab1   642 
Contig length: old 745, new 744

Contig length: old 744, new 745
New start: 0 
I Change at: 54; seg lengths: entry 1, contig 0