No. words: 1142; after pruning: 1116


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:558)  517  0.00 0.37 0.37  UCW059_B05_BE426080Td10P033C03P002B061R1_045.ab1       16   561 (35)  C UCW060_B05_BE426080Td10P033C03P002B061F1_045.ab1   (0)   546     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1    UCW059_B05_BE426080Td10P033C03P002B061R1_045.ab1     1 
  300  C UCW060_B05_BE426080Td10P033C03P002B061F1_045.ab1   260 
  304    UCW059_B05_BE426080Td10P033C03P002B061R1_045.ab1   304 
Contig length: old 596, new 596

Contig length: old 596, new 598
New start: 0 
I Change at: 21; seg lengths: entry 1, contig 0
I Change at: 35; seg lengths: entry 1, contig 0