No. words: 1163; after pruning: 1137


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:661)  442  0.43 0.00 0.43  UCW059_B08_BE426080Td10P033D03P002B061R1_062.ab1      197   664 (33)  C UCW060_B08_BE426080Td10P033D03P002B061F1_062.ab1   (0)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1    UCW059_B08_BE426080Td10P033D03P002B061R1_062.ab1     1 
  463  C UCW060_B08_BE426080Td10P033D03P002B061F1_062.ab1   200 
  487    UCW059_B08_BE426080Td10P033D03P002B061R1_062.ab1   487 
  523  C UCW060_B08_BE426080Td10P033D03P002B061F1_062.ab1   140 
  531    UCW059_B08_BE426080Td10P033D03P002B061R1_062.ab1   531 
  599  C UCW060_B08_BE426080Td10P033D03P002B061F1_062.ab1    64 
  603    UCW059_B08_BE426080Td10P033D03P002B061R1_062.ab1   603 
  623  C UCW060_B08_BE426080Td10P033D03P002B061F1_062.ab1    40 
  631    UCW059_B08_BE426080Td10P033D03P002B061R1_062.ab1   631 
Contig length: old 697, new 697

Contig length: old 697, new 697
New start: 0