No. words: 1424; after pruning: 1398


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:668)  632  0.60 0.00 0.30  UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1        1   670 (36)  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   (50)   668     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   718 
   58    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1     8 
   86  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   633 
   94    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1    44 
  106  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   613 
  118    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1    68 
  134  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   585 
  142    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1    92 
  182  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   537 
  226    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1   176 
  518  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   201 
  542    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1   492 
  574  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   145 
  586    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1   536 
  594  C UCW007R_C04_BE426080Tu01P002B06B121R1_028.ab1   125 
  602    UCW007F_C04_BE426080Tu01P002B06B121F1_028.ab1   552 
Contig length: old 755, new 756

Contig length: old 756, new 756
New start: 0