No. words: 639; after pruning: 613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.5 (1,1:284)  266  0.00 0.00 0.00  UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1        3   285 (35)  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   (36)   283     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   319 
   88    UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1    54 
   92  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   228 
  108    UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1    74 
  112  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   208 
  116    UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1    82 
  124  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   196 
  132    UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1    98 
  140  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   180 
  164    UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1   130 
  212  C UCW004R_C01_BE4352603Ld03P002A01A071R1_002.ab1   108 
  224    UCW004F_C01_BE4352603Ld03P002A01A071F1_002.ab1   190 
Contig length: old 354, new 354

Contig length: old 354, new 354
New start: 0