No. words: 1648; after pruning: 1622


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.7 (1,1:795)  758  0.00 0.00 0.00  UCW004F_A10_BE442918As01P002B04B101F1_069.ab1        1   796 (24)  C UCW004R_A10_BE442918As01P002B04B101R1_069.ab1   (32)   796     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C UCW004R_A10_BE442918As01P002B04B101R1_069.ab1   828 
   36    UCW004F_A10_BE442918As01P002B04B101F1_069.ab1     4 
  356  C UCW004R_A10_BE442918As01P002B04B101R1_069.ab1   473 
  360    UCW004F_A10_BE442918As01P002B04B101F1_069.ab1   328 
  384  C UCW004R_A10_BE442918As01P002B04B101R1_069.ab1   445 
  388    UCW004F_A10_BE442918As01P002B04B101F1_069.ab1   356 
  420  C UCW004R_A10_BE442918As01P002B04B101R1_069.ab1   409 
  452    UCW004F_A10_BE442918As01P002B04B101F1_069.ab1   420 
  464  C UCW004R_A10_BE442918As01P002B04B101R1_069.ab1   365 
  824    UCW004F_A10_BE442918As01P002B04B101F1_069.ab1   792 
Contig length: old 852, new 852

Contig length: old 852, new 852
New start: 0