No. words: 1648; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.4 (1,1:810)  759  0.25 0.25 0.00  UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1        1   809 (6)  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   (22)   811     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   833 
   26    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1     4 
   30  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   804 
   34    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1    12 
   90  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   744 
   94    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1    72 
  342  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   492 
  350    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   328 
  358  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   476 
  362    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   340 
  366  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   468 
  378    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   356 
  382  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   452 
  386    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   364 
  410  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   424 
  450    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   428 
  454  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   380 
  494    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   472 
  506  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   328 
  526    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   504 
  534  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   300 
  602    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   580 
  612  C UCW004R_A09_BE442918Ld01P002B04B101R1_065.ab1   221 
  826    UCW004F_A09_BE442918Ld01P002B04B101F1_065.ab1   803 
Contig length: old 837, new 838

Contig length: old 838, new 838
New start: 0