No. words: 1649; after pruning: 1623


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:807)  750  0.25 0.37 0.00  UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1        2   806 (13)  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   (22)   808     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   830 
   33    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1    11 
   41  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   790 
   45    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1    23 
  341  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   490 
  349    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   327 
  353  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   478 
  357    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   335 
  365  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   466 
  385    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   363 
  397  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   434 
  401    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   379 
  405  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   426 
  437    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   415 
  445  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   386 
  493    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   471 
  501  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   330 
  525    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   503 
  529  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1   302 
  745    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   723 
  749  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1    82 
  790    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   767 
  798  C UCW004R_C09_BE442918Ld03P002B04B101R1_066.ab1    33 
  806    UCW004F_C09_BE442918Ld03P002B04B101F1_066.ab1   783 
Contig length: old 841, new 842

Contig length: old 842, new 842
New start: 0