No. words: 1662; after pruning: 1636


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 16.2 (1,1:824)  764  0.00 0.00 0.00  UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1       22   825 (27)  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   (6)   804     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1     1 
   25  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   801 
   33    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1    33 
  289  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   537 
  301    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1   301 
  341  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   485 
  345    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1   345 
  349  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   477 
  373    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1   373 
  377  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   449 
  393    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1   393 
  401  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   425 
  537    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1   537 
  541  C UCW004R_D09_BE442918Ld04P002B04B101R1_074.ab1   285 
  821    UCW004F_D09_BE442918Ld04P002B04B101F1_074.ab1   821 
Contig length: old 852, new 852

Contig length: old 852, new 852
New start: 0