No. words: 1635; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:811)  739  0.12 0.37 0.25  UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1        1   805 (0)  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   (18)   812     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   830 
   22    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1     4 
  286  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   544 
  290    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   272 
  306  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   524 
  310    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   292 
  338  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   492 
  346    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   328 
  354  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   476 
  358    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   340 
  362  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   468 
  398    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   380 
  406  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   424 
  490    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   472 
  494  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   336 
  522    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   504 
  526  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1   304 
  804    UCW004F_E09_BE442918Ld05P002B04B101F1_067.ab1   787 
  819  C UCW004R_E09_BE442918Ld05P002B04B101R1_067.ab1    10 
Contig length: old 830, new 828

Contig length: old 828, new 828
New start: 0