No. words: 1647; after pruning: 1621


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.9 (1,1:807)  766  0.00 0.00 0.00  UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1        1   808 (11)  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   (20)   808     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   828 
   24    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1     4 
   28  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   801 
   32    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1    12 
   40  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   789 
   44    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1    24 
   84  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   745 
   88    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1    68 
  284  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   545 
  292    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   272 
  340  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   489 
  348    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   328 
  352  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   477 
  360    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   340 
  364  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   465 
  372    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   352 
  404  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   425 
  488    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   468 
  492  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   337 
  496    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   476 
  500  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   329 
  520    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   500 
  528  C UCW004R_F09_BE442918Ld06P002B04B101R1_075.ab1   301 
  812    UCW004F_F09_BE442918Ld06P002B04B101F1_075.ab1   792 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0