No. words: 1526; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:813)  671  0.00 0.14 0.14  UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1        1   710 (0)  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   (3)   813   104 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   816 
    7    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1     4 
  278  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   539 
  282    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   279 
  326  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   491 
  334    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   331 
  342  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   475 
  346    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   343 
  354  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   463 
  358    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   355 
  362  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   455 
  370    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   367 
  386  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   431 
  390    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   387 
  394  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   423 
  478    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   475 
  490  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   327 
  498    UCW004F_G09_BE442918Ld07P002B04B101F1_068.ab1   495 
  502  C UCW004R_G09_BE442918Ld07P002B04B101R1_068.ab1   315 
Contig length: old 816, new 816

Contig length: old 816, new 816
New start: 0