No. words: 1646; after pruning: 1620


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.0 (1,1:809)  771  0.00 0.00 0.00  UCW004F_H09_BE442918Tu01P002B04B101F1_076.ab1        1   810 (7)  C UCW004R_H09_BE442918Tu01P002B04B101R1_076.ab1   (19)   810     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C UCW004R_H09_BE442918Tu01P002B04B101R1_076.ab1   829 
   23    UCW004F_H09_BE442918Tu01P002B04B101F1_076.ab1     4 
  343  C UCW004R_H09_BE442918Tu01P002B04B101R1_076.ab1   487 
  347    UCW004F_H09_BE442918Tu01P002B04B101F1_076.ab1   328 
  375  C UCW004R_H09_BE442918Tu01P002B04B101R1_076.ab1   455 
  387    UCW004F_H09_BE442918Tu01P002B04B101F1_076.ab1   368 
  407  C UCW004R_H09_BE442918Tu01P002B04B101R1_076.ab1   423 
  815    UCW004F_H09_BE442918Tu01P002B04B101F1_076.ab1   796 
  819  C UCW004R_H09_BE442918Tu01P002B04B101R1_076.ab1    11 
  823    UCW004F_H09_BE442918Tu01P002B04B101F1_076.ab1   804 
Contig length: old 836, new 836

Contig length: old 836, new 836
New start: 0