No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:833)  205  2.16 0.43 0.00  UCW004F_D10_BE442918Tu02P002B04B101F1_078.ab1      488   718 (0)  C UCW004R_D10_BE442918Tu02P002B04B101R1_078.ab1   (0)   348   117 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1    UCW004F_D10_BE442918Tu02P002B04B101F1_078.ab1     1 
  541  C UCW004R_D10_BE442918Tu02P002B04B101R1_078.ab1   295 
  545    UCW004F_D10_BE442918Tu02P002B04B101F1_078.ab1   545 
  565  C UCW004R_D10_BE442918Tu02P002B04B101R1_078.ab1   271 
  577    UCW004F_D10_BE442918Tu02P002B04B101F1_078.ab1   577 
  581  C UCW004R_D10_BE442918Tu02P002B04B101R1_078.ab1   255 
Contig length: old 834, new 835

Contig length: old 835, new 835
New start: 0