No. words: 1373; after pruning: 1347


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:653)  628  0.00 0.31 0.15  UCW008F_E02_BE443187As01P013F02F081F1_008.ab1        1   654 (29)  C UCW008R_E02_BE443187As01P013F02F081R1_008.ab1   (35)   655     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C UCW008R_E02_BE443187As01P013F02F081R1_008.ab1   690 
   60    UCW008F_E02_BE443187As01P013F02F081F1_008.ab1    23 
   64  C UCW008R_E02_BE443187As01P013F02F081R1_008.ab1   627 
  584    UCW008F_E02_BE443187As01P013F02F081F1_008.ab1   547 
  588  C UCW008R_E02_BE443187As01P013F02F081R1_008.ab1   103 
  616    UCW008F_E02_BE443187As01P013F02F081F1_008.ab1   579 
  624  C UCW008R_E02_BE443187As01P013F02F081R1_008.ab1    67 
  656    UCW008F_E02_BE443187As01P013F02F081F1_008.ab1   619 
  660  C UCW008R_E02_BE443187As01P013F02F081R1_008.ab1    31 
  668    UCW008F_E02_BE443187As01P013F02F081F1_008.ab1   631 
Contig length: old 719, new 720

Contig length: old 720, new 720
New start: 0