No. words: 1372; after pruning: 1346


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:649)  614  0.31 0.46 0.15  UCW008F_F02_BE443187As02P013F02F081F1_006.ab1        1   650 (31)  C UCW008R_F02_BE443187As02P013F02F081R1_006.ab1   (39)   652     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW008R_F02_BE443187As02P013F02F081R1_006.ab1   691 
   62    UCW008F_F02_BE443187As02P013F02F081F1_006.ab1    20 
   66  C UCW008R_F02_BE443187As02P013F02F081R1_006.ab1   626 
  586    UCW008F_F02_BE443187As02P013F02F081F1_006.ab1   544 
  602  C UCW008R_F02_BE443187As02P013F02F081R1_006.ab1    90 
  606    UCW008F_F02_BE443187As02P013F02F081F1_006.ab1   564 
  651  C UCW008R_F02_BE443187As02P013F02F081R1_006.ab1    41 
  659    UCW008F_F02_BE443187As02P013F02F081F1_006.ab1   617 
  663  C UCW008R_F02_BE443187As02P013F02F081R1_006.ab1    29 
  667    UCW008F_F02_BE443187As02P013F02F081F1_006.ab1   625 
Contig length: old 722, new 723

Contig length: old 723, new 723
New start: 0