No. words: 1380; after pruning: 1340


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:659)  630  0.15 0.46 0.15  UCW008F_G02_BE443187At01P013F02F081F1_004.ab1        2   660 (31)  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   (28)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   689 
   59    UCW008F_G02_BE443187At01P013F02F081F1_004.ab1    29 
   63  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   627 
   79    UCW008F_G02_BE443187At01P013F02F081F1_004.ab1    49 
  103  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   587 
  107    UCW008F_G02_BE443187At01P013F02F081F1_004.ab1    77 
  115  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   575 
  119    UCW008F_G02_BE443187At01P013F02F081F1_004.ab1    89 
  147  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   543 
  151    UCW008F_G02_BE443187At01P013F02F081F1_004.ab1   121 
  159  C UCW008R_G02_BE443187At01P013F02F081R1_004.ab1   531 
  667    UCW008F_G02_BE443187At01P013F02F081F1_004.ab1   637 
Contig length: old 720, new 721

Contig length: old 721, new 721
New start: 0