No. words: 1377; after pruning: 1323


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:656)  628  0.46 0.30 0.15  UCW008F_H02_BE443187At02P013F02F081F1_002.ab1        1   657 (31)  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   (31)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   689 
   56    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1    23 
   64  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   626 
   76    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1    43 
   84  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   606 
   92    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1    59 
  104  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   586 
  108    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1    75 
  136  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   554 
  160    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1   127 
  164  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   526 
  520    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1   487 
  524  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   166 
  560    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1   527 
  564  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1   126 
  592    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1   559 
  596  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1    94 
  667    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1   634 
  677  C UCW008R_H02_BE443187At02P013F02F081R1_002.ab1    14 
  685    UCW008F_H02_BE443187At02P013F02F081F1_002.ab1   652 
Contig length: old 720, new 721

Contig length: old 721, new 721
New start: 0