No. words: 1366; after pruning: 1326


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.8 (1,1:647)  619  0.16 0.31 0.16  UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1        5   648 (33)  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   (40)   645     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   685 
   57    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1    19 
   65  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   621 
   77    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1    39 
   85  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   601 
   93    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1    55 
  114  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   572 
  118    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1    80 
  126  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   560 
  558    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1   520 
  562  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   124 
  582    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1   544 
  586  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1   100 
  654    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1   616 
  658  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1    28 
  662    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1   624 
  675  C UCW008R_A01_BE443187Ld01P013F02F081R1_015.ab1    12 
  679    UCW008F_A01_BE443187Ld01P013F02F081F1_015.ab1   641 
Contig length: old 718, new 719

Contig length: old 719, new 719
New start: 0