No. words: 1378; after pruning: 1352


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:656)  629  0.00 0.46 0.15  UCW008F_B01_BE443187Ld02P013F02F081F1_013.ab1        2   657 (33)  C UCW008R_B01_BE443187Ld02P013F02F081R1_013.ab1   (30)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCW008R_B01_BE443187Ld02P013F02F081R1_013.ab1   688 
  505    UCW008F_B01_BE443187Ld02P013F02F081F1_013.ab1   473 
  509  C UCW008R_B01_BE443187Ld02P013F02F081R1_013.ab1   180 
  585    UCW008F_B01_BE443187Ld02P013F02F081F1_013.ab1   553 
  589  C UCW008R_B01_BE443187Ld02P013F02F081R1_013.ab1   100 
  609    UCW008F_B01_BE443187Ld02P013F02F081F1_013.ab1   577 
  613  C UCW008R_B01_BE443187Ld02P013F02F081R1_013.ab1    76 
  657    UCW008F_B01_BE443187Ld02P013F02F081F1_013.ab1   625 
Contig length: old 721, new 722

Contig length: old 722, new 722
New start: 0