No. words: 1337; after pruning: 1283


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:652)  626  0.31 0.31 0.15  UCW008F_C01_BE443187Ld03P013F02F081F1_011.ab1        1   653 (1)  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1   (29)   654     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1   683 
   49    UCW008F_C01_BE443187Ld03P013F02F081F1_011.ab1    18 
   69  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1   615 
   73    UCW008F_C01_BE443187Ld03P013F02F081F1_011.ab1    42 
  191  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1   493 
  199    UCW008F_C01_BE443187Ld03P013F02F081F1_011.ab1   168 
  203  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1   481 
  211    UCW008F_C01_BE443187Ld03P013F02F081F1_011.ab1   180 
  215  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1   469 
  663    UCW008F_C01_BE443187Ld03P013F02F081F1_011.ab1   632 
  674  C UCW008R_C01_BE443187Ld03P013F02F081R1_011.ab1    11 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0