No. words: 1376; after pruning: 1350


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:661)  633  0.00 0.61 0.00  UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1        2   661 (25)  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   (26)   664     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   690 
   57    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1    28 
   61  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   630 
   77    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1    48 
  113  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   578 
  117    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1    88 
  133  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   558 
  557    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1   528 
  561  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   130 
  569    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1   540 
  573  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1   118 
  653    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1   624 
  677  C UCW008R_E01_BE443187Ld05P013F02F081R1_007.ab1    14 
  681    UCW008F_E01_BE443187Ld05P013F02F081F1_007.ab1   652 
Contig length: old 714, new 715

Contig length: old 715, new 715
New start: 0