No. words: 1377; after pruning: 1351


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:658)  630  0.00 0.46 0.15  UCW008F_F01_BE443187Ld06P013F02F081F1_005.ab1        2   659 (28)  C UCW008R_F01_BE443187Ld06P013F02F081R1_005.ab1   (30)   660     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCW008R_F01_BE443187Ld06P013F02F081R1_005.ab1   690 
  561    UCW008F_F01_BE443187Ld06P013F02F081F1_005.ab1   529 
  565  C UCW008R_F01_BE443187Ld06P013F02F081R1_005.ab1   126 
  661    UCW008F_F01_BE443187Ld06P013F02F081F1_005.ab1   629 
  665  C UCW008R_F01_BE443187Ld06P013F02F081R1_005.ab1    26 
  669    UCW008F_F01_BE443187Ld06P013F02F081F1_005.ab1   637 
Contig length: old 718, new 719

Contig length: old 719, new 719
New start: 0